No. Because I don't want to build serial. I want parallel only.
Thanks & Regards,
Yasir Israr
-----Original Message-----
From: Hai Nguyen [mailto:nhai.qn.gmail.com]
Sent: Saturday, December 10, 2016 2:10 PM
To: AMBER Mailing List
Cc: elvis_bcp.elvismartis.in
Subject: Re: [AMBER] Installation of AMBER on Centos Rocks 6.2
have you performed serial build yet?
Hai
On Sat, Dec 10, 2016 at 3:36 AM, <yasir.orionsolutions.co.in> wrote:
> Hi Elvis
> Below is the process which I'm doing & getting error log file attached.
>
> First I check mpi using below command. (Output in Files Attached)
> mpif90 -show
> mpicc -show
>
> Then set AMBERHOME properly.
> cd $AMBERHOME
> ./configure -mpi gnu (As I'm using OpenMPI of Rocks 6.2) make install
>
> After this I've set DO_PARALLEL
> export DO_PARALLEL='mpirun -np 8'
> make test (Out of make test attached in mail)
>
> #But I've not seen any amber.sh or amber.csh file on cd $AMBERHOME
> directory)
>
> Please suggest your kind further action. Also help how to set amber
> use for all Rocks User's for Parallel use for same.
>
>
>
>
>
> Thanks & Regards,
> Yasir Israr
>
> -----Original Message-----
> From: Elvis Martis [mailto:elvis_bcp.elvismartis.in]
> Sent: Friday, December 9, 2016 10:56 AM
> To: Yasir Israr; AMBER Mailing List
> Subject: Re: [AMBER] Installation of AMBER on Centos Rocks 6.2
>
> Hi Yasir,
> Can you elaborate on what exactly you are unable to do?
>
> As far as setting the environment for AMBER is straightforward.
> You can do two things here,
> 1) define the amber environment in your bashrc or cshrc file in the
> home directory. You can open and copy the contents of
> $AMBERHOME/amber.sh for bashrc or $AMBERHOME/amber.csh for cshrc. This
> will automatically set the environment in your profile.
> 2) Alternatively, you can source the amber.sh or amber.csh by typing
> "source </path_to_amber>/amber.sh" or "source </path_to_amber>/amber.csh"
> to set the environment. Ignore the quotes.
>
> However, amber.sh and amber.csh will only appear after you have
> successfully configured and compiled amber on your system.
> All the best.
>
> Regards
>
> *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> [image: photo] Email: elvis_bcp.elvismartis.in
> <elvis_bcp.elvismartis.in>
> Website: http://www.elvismartis.in <http://www.elvismartis.in/> group
> website: http://www.profeccoutinho.net.in/
> Address:
>
> Kalina, Santa Cruz [E]
> , Mumbai, 400 098, INDIA
>
> Alt. e-mail: emartis12.live.com
> <https://in.linkedin.com/in/elvisadrianmartis>
>
>
> On 9 December 2016 at 09:39, Yasir Israr <yasir.orionsolutions.co.in>
> wrote:
>
> > [image: Boxbe] <https://www.boxbe.com/overview> Yasir Israr (
> > yasir.orionsolutions.co.in) is not on your Guest List
> > <https://www.boxbe.com/approved-list?tc_serial=27923477727&tc_rand=2
> > 01
> > 7345861&utm_source=stf&utm_medium=email&utm_campaign=ANNO_MWTP&utm_c
> > on
> > tent=001&key=hzan1%2BtMEch0ZWSgvq68eGLvNDNg9hqAr2ZbrNx464Y%3D&token=
> > Fb
> > VQK36r6c8ysBYazDtJ1uzaByiecGUWgNVh05yu3M%2FJ2i%2Bhlp2l7y2c3SLXOvj6>
> > | Approve sender
> > <https://www.boxbe.com/anno?tc_serial=27923477727&tc_rand=2017345861
> > &u
> > tm_source=stf&utm_medium=email&utm_campaign=ANNO_MWTP&utm_content=00
> > 1&
> > key=hzan1%2BtMEch0ZWSgvq68eGLvNDNg9hqAr2ZbrNx464Y%3D&token=FbVQK36r6
> > c8 ysBYazDtJ1uzaByiecGUWgNVh05yu3M%2FJ2i%2Bhlp2l7y2c3SLXOvj6>
> > | Approve domain
> > <https://www.boxbe.com/anno?tc_serial=27923477727&tc_rand=2017345861
> > &u
> > tm_source=stf&utm_medium=email&utm_campaign=ANNO_MWTP&utm_content=00
> > 1&
> > dom&key=hzan1%2BtMEch0ZWSgvq68eGLvNDNg9hqAr2ZbrNx464Y%3D&token=FbVQK
> > 36 r6c8ysBYazDtJ1uzaByiecGUWgNVh05yu3M%2FJ2i%2Bhlp2l7y2c3SLXOvj6>
> >
> > I follow same but couldn't able to complete installation. Can
> > anybody let me know after installation how to set AMBER use to user
> > & there environment & path setting ?
> >
> > Thanks & Regards
> > Yasir Israr
> >
> > > On 09-Dec-2016, at 8:38 AM, Elvis Martis
> > > <elvis_bcp.elvismartis.in>
> > wrote:
> > >
> > > HI Yasir,
> > > Please follow Jason's page which gives step by step instructions
> > > for installing AMBER on any OS.
> > > http://jswails.wikidot.com/installing-amber14-and-ambertools14
> > > <Also
> > works
> > > for Amber16>
> > > All the best.
> > >
> > > Regards
> > >
> > > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > > [image: photo] Email: <elvis_bcp.elvismartis.in>
> > > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > > group website: http://www.profeccoutinho.net.in/
> > > Address:
> > >
> > > Kalina, Santa Cruz [E]
> > > , Mumbai, 400 098, INDIA
> > >
> > > Alt. e-mail: emartis12.live.com
> > > <https://in.linkedin.com/in/elvisadrianmartis>
> > >
> > >
> > >> On 9 December 2016 at 07:53, Yasir Israr
> > >> <yasir.orionsolutions.co.in>
> > wrote:
> > >>
> > >> [image: Boxbe] <https://www.boxbe.com/overview> This message is
> > eligible
> > >> for Automatic Cleanup! (yasir.orionsolutions.co.in) Add cleanup
> > >> rule <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.
> > com%2Fcleanup%3Fkey%3DUbFQXKO9y1kHqH0wUC8X%252FPb64xtTtA82S1K7bnUqUR
> > g%
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> > 6zg%253D%253D&tc_serial=27922260677&tc_rand=1078535676&utm_source=st
> > f& utm_ medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> > >> | More info
> > >> <http://blog.boxbe.com/general/boxbe-automatic-
> > cleanup?tc_serial=27922260677&tc_rand=1078535676&utm_source=
> > stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> > >>
> > >> Hi Admins
> > >> Please help in sharing installation guide for Rocks Centos.
> > >>
> > >> Thanks & Regards
> > >> Yasir Israr
> > >>
> > >> _______________________________________________
> > >> AMBER mailing list
> > >> AMBER.ambermd.org
> > >> http://lists.ambermd.org/mailman/listinfo/amber
> > >>
> > >>
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> >
> >
> >
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Received on Sat Dec 10 2016 - 01:00:04 PST
