Re: [AMBER] Installation of AMBER on Centos Rocks 6.2

From: Elvis Martis <elvis_bcp.elvismartis.in>
Date: Fri, 9 Dec 2016 10:56:12 +0530

Hi Yasir,
Can you elaborate on what exactly you are unable to do?

As far as setting the environment for AMBER is straightforward.
You can do two things here,
1) define the amber environment in your bashrc or cshrc file in the home
directory. You can open and copy the contents of $AMBERHOME/amber.sh for
bashrc or $AMBERHOME/amber.csh for cshrc. This will automatically set the
environment in your profile.
2) Alternatively, you can source the amber.sh or amber.csh by typing
"source </path_to_amber>/amber.sh" or "source </path_to_amber>/amber.csh"
to set the environment. Ignore the quotes.

However, amber.sh and amber.csh will only appear after you have
successfully configured and compiled amber on your system.
All the best.

Regards

*Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
[image: photo] Email: elvis_bcp.elvismartis.in <elvis_bcp.elvismartis.in>
Website: http://www.elvismartis.in <http://www.elvismartis.in/>
group website: http://www.profeccoutinho.net.in/
Address:

 Kalina, Santa Cruz [E]
, Mumbai, 400 098, INDIA

Alt. e-mail: emartis12.live.com
<https://in.linkedin.com/in/elvisadrianmartis>


On 9 December 2016 at 09:39, Yasir Israr <yasir.orionsolutions.co.in> wrote:

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>
> I follow same but couldn't able to complete installation. Can anybody let
> me know after installation how to set AMBER use to user & there environment
> & path setting ?
>
> Thanks & Regards
> Yasir Israr
>
> > On 09-Dec-2016, at 8:38 AM, Elvis Martis <elvis_bcp.elvismartis.in>
> wrote:
> >
> > HI Yasir,
> > Please follow Jason's page which gives step by step instructions for
> > installing AMBER on any OS.
> > http://jswails.wikidot.com/installing-amber14-and-ambertools14 <Also
> works
> > for Amber16>
> > All the best.
> >
> > Regards
> >
> > *Elvis Martis* Ph.D. Student, Bombay College of Pharmacy
> > [image: photo] Email: <elvis_bcp.elvismartis.in>
> > Website: http://www.elvismartis.in <http://www.elvismartis.in/>
> > group website: http://www.profeccoutinho.net.in/
> > Address:
> > ​
> > Kalina, Santa Cruz [E]
> > ​, Mumbai, 400 098, INDIA​
> >
> > Alt. e-mail: emartis12.live.com
> > <https://in.linkedin.com/in/elvisadrianmartis>
> >
> >
> >> On 9 December 2016 at 07:53, Yasir Israr <yasir.orionsolutions.co.in>
> wrote:
> >>
> >> [image: Boxbe] <https://www.boxbe.com/overview> This message is
> eligible
> >> for Automatic Cleanup! (yasir.orionsolutions.co.in) Add cleanup rule
> >> <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.
> com%2Fcleanup%3Fkey%3DUbFQXKO9y1kHqH0wUC8X%252FPb64xtTtA82S1K7bnUqURg%
> 253D%26token%3DyKqT71Am245cLlsYECZ1FSBfV9vAxI74MJjQZw9U%252F0rkaRHxSjHhD%
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> >> | More info
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> stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> >>
> >> Hi Admins
> >> Please help in sharing installation guide for Rocks Centos.
> >>
> >> Thanks & Regards
> >> Yasir Israr
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >>
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
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Received on Thu Dec 08 2016 - 21:30:02 PST
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