Re: [AMBER] Convert mdcrd files into pbd files

From: Daniel Roe <>
Date: Sun, 27 Nov 2016 14:01:15 -0500

As Hai suggested, cpptraj can do this for you. For example, something
like this could work for you:

parm myparm.parm7
trajin mytraj.mdcrd
trajout mypdb.pdb multi

See the Amber16 manual for full details on commands/keywords.


On Fri, Nov 25, 2016 at 5:47 PM, The Cromicus Productions
<> wrote:
> Hi everyone,
> is there an easy way, without using vmd, to convert mdcrd files (with their
> prmtop file) into pdb files? I'm trying to automate a procedure in bash and
> that would be very helpful.
> Thanks a lot!
> _______________________________________________
> AMBER mailing list

Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
AMBER mailing list
Received on Sun Nov 27 2016 - 11:30:03 PST
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