Hello doctor
The RNA sequence is the first structure in my mind, the secondary structure of RNA which is showing by parenthesis and dots ((..)) .
I want to make a tertiary RNA structure (pseudoknot form) with my desire secondary structure.
Once I used nab according to the program _8.nab input file, which I just could mention the sequence there, but no secondary structure.
It is important for me to have the relation between different RNA structures. Otherwise the program _8.nab made reasonable pseudoknot.pdb.
thanks and Regards
On Sun, 11/27/2016 12:40 PM, David A Case <david.case.rutgers.edu> wrote:
> On Sun, Nov 27, 2016, Mohaddeseh Habibzadeh wrote:
>
> > I want to have a NAB input file containing first and second structure of RNA.
> > Is there any way to make the pdb file of third structure of RNA by this?
>
> We need lots more information and context. What is the "NAB input file"?
> What are the "first", "second" and "third" RNA structures?
>
> Don't be afraid to experiment. Generally, showing exactly what you tried,
> and showing what the result was, is the best way to get specific help.
>
> ....dac
>
>
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Received on Sun Nov 27 2016 - 10:00:03 PST
