Have you autoimaged your trajectories before the analysis?
If by ‘not normal’ you mean that they are higher than you expected, it might be due to that.
Cheers
Juan
> On 23 Nov 2016, at 10:07, Sepideh Jafari <sepidejafari71.gmail.com> wrote:
>
> Dear amber users
>
> I performed some MD run for ERK protein and analyzed it with RMSF test
> But i have problem with it, because the values of the the graph of rmsf are
> not normal.
> I there anyone help me with this?
> <rmsf.png><rmsd.png>_______________________________________________
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Received on Wed Nov 23 2016 - 05:00:02 PST
