I'll try that and let you know!
On Tue, Nov 22, 2016 at 8:11 AM, David A Case <david.case.rutgers.edu>
wrote:
> On Mon, Nov 21, 2016, The Cromicus Productions wrote:
> >
> > I'm currently working with NMA in nab. I can simulate the modes
> > and get the frequencies with the code below. I'm working with DNA.
> > Say I want to pin both extremes (residues 1,10,11 and 20 for example)
> > for my NMA to see "perfect wave" motions, is this possible? What should
> > I modify to the code?
>
> One idea: modify your prmtop file to make the masses of the end residues
> very
> large. The recompute the normal modes. The atoms at the end will not move
> very much.
>
> ....dac
>
>
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Received on Tue Nov 22 2016 - 07:00:02 PST
