Re: [AMBER] Converting a PDB Collection to a NetCDF trajectory

From: Christina Bergonzo <cbergonzo.gmail.com>
Date: Fri, 18 Nov 2016 15:30:48 -0500

Hi Dmitry,

Cpptraj recognizes wild cards, so you should be able to do something like :

trajin *.pdb
trajout combined.nc netcdf

-Christina

> On Nov 18, 2016, at 3:11 PM, Dmitry Suplatov <genesup.gmail.com> wrote:
>
> Dear Amber Users,
>
> can you suggest a plausible approach to converting a collection of PDB
> files (some 10 000 - 20 000 frames) to a NetCDF trajectory format? Input:
> PDB files; Output: .nc trajectory
>
> Thank you.
> Best,
> Dmitry
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Received on Fri Nov 18 2016 - 13:00:02 PST
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