[AMBER] Methylated adenine parameter

From: Kshatresh Dutta Dubey <kshatresh.gmail.com>
Date: Tue, 15 Nov 2016 12:45:07 +0200

Dear Users,

I have to simulate a system that contains methylated adenine assigned as
6MA in pdb. I found that parameters for 6MA is already in amber but as
modified RNA ( leaprc.modrna08). I am unable to find the corresponding
parameter for modified DNA in amber list of units in default paramters.
I will appreciate if someone can suggest me where can I find parameter for
methylated adenine to be used for DNAs. I have very little experience of
nucleic acid simulations.

Thanks and regards

With best regards
Kshatresh Dutta Dubey
Post Doctoral Researcher,
Lise Meitner Center for Computational Quantum Chemistry
Hebrew University of Jerusalem Israel
Jerusalem, Israel
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Received on Tue Nov 15 2016 - 03:00:02 PST
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