Dear Users,
I have to simulate a system that contains methylated adenine assigned as
6MA in pdb. I found that parameters for 6MA is already in amber but as
modified RNA ( leaprc.modrna08). I am unable to find the corresponding
parameter for modified DNA in amber list of units in default paramters.
I will appreciate if someone can suggest me where can I find parameter for
methylated adenine to be used for DNAs. I have very little experience of
nucleic acid simulations.
Thanks and regards
Kshatresh
--
With best regards
************************************************************************************************
Kshatresh Dutta Dubey
Post Doctoral Researcher,
Lise Meitner Center for Computational Quantum Chemistry
Hebrew University of Jerusalem Israel
Jerusalem, Israel
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Received on Tue Nov 15 2016 - 03:00:02 PST
