Re: [AMBER] Uridine diphosphate (UDP) - tleap

From: FyD <>
Date: Wed, 09 Nov 2016 11:58:18 +0100

Dear Anna,

You might be interested in:

as you can see you can add as many phosphate groups you want and where
you want...

regards, Francois

> I am working with Uridine diphosphate (UDP) bonded with a sugar and
> I have some problems.
> First of all, I am using xleap or tleap to source the Glycam force
> field in order to define my sugar.
> Then, I sourced the RNA.OL3 force field to define the UDP group.
> The problem is that the RNA.OLE force field doesn't contain a
> template name to define UDP.
> So, how can I define the diphosphate or the extra phosphate?

           F.-Y. Dupradeau

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Received on Wed Nov 09 2016 - 03:00:03 PST
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