Re: [AMBER] Simulation of protein in lipid blayer using GB solvation model

From: Carlos Simmerling <>
Date: Wed, 2 Nov 2016 07:34:49 -0400

no it really does not, not to me anyway. I am not aware of a GB model in
Amber that can properly handle the change in dielectric. There has been
work in other programs to develop implicit membrane models, you might look
into that.

On Wed, Nov 2, 2016 at 6:49 AM, Nikolay N. Kuzmich <>

> Dear Amber users,
> I would like to find out your opinion if it makes sense to conduct
> MD simulation of transmembrane protein (influenza hemagglutinine) in
> lipid bilayer using GB solvation model.
> Thank you in advance,
> Nick
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Received on Wed Nov 02 2016 - 05:00:02 PDT
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