Dear Nikolay,
> I'm going to conduct MD simulation for protein molecule
> which has some covalently bound oligosaccharide residues.
> Should I treat these residues separately by the specially designed
> forcefield (e.g. GLYCAM) ?
You might be interested in a work about glicoconjugates reported in REDDB...
http://q4md-forcefieldtools.org/REDDB/projects/F-85/
In my opinion the approach to follow to design your FF is highly
related to the oligosaccharide structure itself...
regards, Francois
F.-Y. Dupradeau
---
http://q4md-forcefieldtools.org/FyD/
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Received on Sat Oct 29 2016 - 05:00:02 PDT
