Re: [AMBER] Separate forcefield for oligosaccharide residues?

From: FyD <>
Date: Sat, 29 Oct 2016 12:27:47 +0200

Dear Nikolay,

> I'm going to conduct MD simulation for protein molecule
> which has some covalently bound oligosaccharide residues.
> Should I treat these residues separately by the specially designed
> forcefield (e.g. GLYCAM) ?

You might be interested in a work about glicoconjugates reported in REDDB...
In my opinion the approach to follow to design your FF is highly
related to the oligosaccharide structure itself...

regards, Francois

           F.-Y. Dupradeau

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Received on Sat Oct 29 2016 - 05:00:02 PDT
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