Re: [AMBER] aMD used for simulated small peptide with non-standard residues

From: David A Case <david.case.rutgers.edu>
Date: Tue, 25 Oct 2016 08:21:22 -0400

On Mon, Oct 24, 2016, Gabriel Jara wrote:
>
> I am interested in performing a conformational sampling of the peptide in
> order to know its preferential conformations. I think about use accelerated
> molecular dynamics (aMD) for that.

Have you carried out ordinary MD simulations first? That might help isolate
the source of the problem. Also, which MD program are you using?

....dac


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Received on Tue Oct 25 2016 - 05:30:04 PDT
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