Hello Amber Users,
I have a peptide which contains a HYP (hydroxyproline) residue. I wanted to
use ff99SB-ILDN force field and using AMBER12 package. But when I tried to
create the peptide molecule using tleap module I found out that it is
unable to recognize the HYP residue. So I searched for possible answers and
found out that GLYCAM06h has HYP parameters.
I wanted to know whether I can use the GLYCAM06h for HYP and ff99SB-ILDN
for rest of the usual amino acids.
The first two lines of the leap file for generating the peptide is as
follows:
*source leaprc.ff99SBildn*
*source leaprc.GLYCAM_06h*
Any help will be appreciated.
With regards,
Saikat Dutta Chowdhury
Email: pbr322.dutta.gmail.com
Mob:
8017650842
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Received on Fri Oct 21 2016 - 22:00:02 PDT
