Hi Hai,
Thank you for your response.
I am using amber/15
I am new to molecular dynamics what do you mean by source amber.sh?
I have module load amber.
I search the bin and no perl script.
Regards Stacy
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On Sun, Oct 16, 2016 at 11:36 PM, Hai Nguyen<nhai.qn.gmail.com> wrote: hi,
which version of amber you are using? have you sourced amber.sh yet?
That perl script is normally in *$AMBERHOME/bin*
cheers
Hai
On Sun, Oct 16, 2016 at 11:14 PM, Stacyann Nelson <mitize2000.yahoo.com>
wrote:
> Dear All,
>
> I ran MD simulations to equilibrate a protein strand and now I would like
> to analyze the results. However using the process_mdout. perl from the
> tutorial is giving the following error on Comet.
>
> -bash: process_mdout.perl: command not found
>
> My question is how can I get this into my path on comet to run the
> analysis?
>
> Regards
>
> Stacy
>
>
>
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Received on Sun Oct 16 2016 - 21:00:02 PDT
