Re: [AMBER] amb2gmx.pl (sh: rdparm: command not found)

From: David A Case <david.case.rutgers.edu>
Date: Tue, 11 Oct 2016 20:59:33 -0400

On Tue, Oct 11, 2016, shahab shariati wrote:

> [root.ibbs ptraj]# make install
> cd pdb && make
> make[1]: Entering directory `/share/apps/2_amber/amber14/AmberTools/src/ptraj/pdb'

Here you are in the tree /share/apps/2_amer/amber14....

> mv: cannot move `libpdb.a' to `/export/apps/amber/amber14/lib': No such
> file or directory

Here, it looks like your AMBERHOME variable is set to
/export/apps/amber/amber14.

I suspect that, as the message says, you don't have an
/export/apps/amber/amber14/lib directory, and that you AMBERHOME variable is
probably set incorrectly.

Having said that, the advice to move to acpype sounds like a much better
solution.

....dac

[Aside: don't install Amber as root! Take the time to learn how to avoid
doing this.]

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Received on Tue Oct 11 2016 - 18:00:02 PDT
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