Dear amber users,
Hi, I want to do molecular dynamic simulation with amber. The condition of
my protein-ligand system are following as: my protein has Zn+2 ion in the
active site which three histidine coordinate with it by covalent bond. Also
my ligands are sulfonamide and have -1 charge on nitrogen atom which are
oriented from nitrogen atom toward zinc ion in the active site of the
protein.
I wonder if you recommend me a suitable amber tutorial for such kind of
system I explain.
Regards,
Yeganeh
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Received on Tue Oct 04 2016 - 10:00:02 PDT
