[AMBER] Failing to compile AmberTools16 on Mac Sierra with Fink

From: Alan <alanwilter.gmail.com>
Date: Mon, 3 Oct 2016 22:26:26 +0100

Hi there,

I am wondering if someone else had succeeded, I am doing this:

- editting $AMBERHOME/AmberTools/src/configure2: use gcc-fsf-5 g++-fsf-5
- cd $AMBERHOME; ./configure --with-python /sw/bin/python3.5 -macAccelerate

Compiling the NetCDF Fortran interface (may be time-consuming)...
Error: Could not compile with NetCDF Fortran interface.
       gfortran-fsf-5 -fPIC -I/Users/alan/Programmes/amber16/include -o
testp testp.f90 /Users/alan/Programmes/amber16/lib/libnetcdff.a
       Compile error follows:
Undefined symbols for architecture x86_64:
  "_nf__create_", referenced from:
      ___netcdf_MOD_nf90_sync in libnetcdff.a(netcdf.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status

Error: NetCDF build failed.
Configure failed due to the errors above!

Many thanks in advance,

Alan Wilter SOUSA da SILVA, DSc
Senior Bioinformatician, UniProt
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Cambridge CB10 1SD
United Kingdom
Tel: +44 (0)1223 494588
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Received on Mon Oct 03 2016 - 14:30:02 PDT
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