[AMBER] netcdf trajectory

From: Andrew Bostick <andrew.bostick1.gmail.com>
Date: Fri, 23 Sep 2016 11:58:50 +0330

Dear amber users,

I want to have trajectory file as netcdf and no mdcrd.

I will use "ioutfm=1" in in file.

And I will use following command:

mpirun -np 16 $AMBERHOME/bin/sander.MPI -O -i prod.in -o prod.out -p
comp_sol.prmtop -c equil.rst -r prod.rst -x prod.netcdf-inf prod_info

is my manner true?

-----------------------------------------------------------------------------------------------------

How to get/find the end time of an md simulation in amber?

Any help will highly be appreciated.
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Received on Fri Sep 23 2016 - 01:30:02 PDT
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