[AMBER] hbond and autoimage

From: Francesco Gentile <fgentile.ualberta.ca>
Date: Fri, 16 Sep 2016 00:24:29 -0600

Hello,
I am trying to perform an hbond analysis of the interactions occurring
between a ligand and a protein in a MD simulation. My understanding is that
if we want intramolecular hydrogen bonds (example: ligand-receptor or
ligand-water) we have to use the autoimage command. Is that correct? Many
thanks, cheers

-- 
Francesco Gentile
PhD Student, Biophysics
CCIS 3-215, Department of Physics
7-112, Li Ka Shing Centre for Health Research Innovation
University of Alberta, Edmonton, AB T6G 2E1
Canada
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Received on Thu Sep 15 2016 - 23:30:03 PDT