(cd parmed && /home/abhilash/amber16/bin/amber.python setup.py install --no-setuptools -f --prefix=/home/abhilash/amber16 --install-scripts=/home/abhilash/amber16/bin)
Could not remove old script /opt/apps/amber14/bin/parmed.py; you should make sure
this is completely removed in order to make sure you
do not accidentally use the old version of ParmEd
Could not remove old script /opt/apps/amber14/bin/xparmed.py; you should make sure
this is completely removed in order to make sure you
do not accidentally use the old version of ParmEd
Could not remove old script /opt/apps/amber14/bin/parmed.py; you should make sure
this is completely removed in order to make sure you
do not accidentally use the old version of ParmEd
Could not remove old script /opt/apps/amber14/bin/xparmed.py; you should make sure
this is completely removed in order to make sure you
do not accidentally use the old version of ParmEd
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/parmed
copying parmed/scripts.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/vec3.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/topologyobjects.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/parameters.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/residue.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/exceptions.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/__init__.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/periodic_table.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/constants.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/geometry.py -> build/lib.linux-x86_64-2.7/parmed
copying parmed/structure.py -> build/lib.linux-x86_64-2.7/parmed
creating build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/mask.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/readparm.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/asciicrd.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/parameters.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/_chamberparm.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/offlib.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/amberformat.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/__init__.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/_tinkerparm.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/netcdffiles.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/_amberparm.py -> build/lib.linux-x86_64-2.7/parmed/amber
copying parmed/amber/titratable_residues.py -> build/lib.linux-x86_64-2.7/parmed/amber
creating build/lib.linux-x86_64-2.7/parmed/modeller
copying parmed/modeller/residue.py -> build/lib.linux-x86_64-2.7/parmed/modeller
copying parmed/modeller/__init__.py -> build/lib.linux-x86_64-2.7/parmed/modeller
creating build/lib.linux-x86_64-2.7/parmed/tinker
copying parmed/tinker/tinkerfiles.py -> build/lib.linux-x86_64-2.7/parmed/tinker
copying parmed/tinker/system.py -> build/lib.linux-x86_64-2.7/parmed/tinker
copying parmed/tinker/topologyobjects.py -> build/lib.linux-x86_64-2.7/parmed/tinker
copying parmed/tinker/parameterfile.py -> build/lib.linux-x86_64-2.7/parmed/tinker
copying parmed/tinker/__init__.py -> build/lib.linux-x86_64-2.7/parmed/tinker
creating build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/basedimension.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/unit_definitions.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/quantity.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/prefix.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/mymatrix.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/unit_operators.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/standard_dimensions.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/__init__.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/baseunit.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/unit_math.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/constants.py -> build/lib.linux-x86_64-2.7/parmed/unit
copying parmed/unit/unit.py -> build/lib.linux-x86_64-2.7/parmed/unit
creating build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/qmmm.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/__init__.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/cntrl.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/pb.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/ewald.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
copying parmed/amber/mdin/mdin.py -> build/lib.linux-x86_64-2.7/parmed/amber/mdin
creating build/lib.linux-x86_64-2.7/parmed/charmm
copying parmed/charmm/charmmcrds.py -> build/lib.linux-x86_64-2.7/parmed/charmm
copying parmed/charmm/_charmmfile.py -> build/lib.linux-x86_64-2.7/parmed/charmm
copying parmed/charmm/parameters.py -> build/lib.linux-x86_64-2.7/parmed/charmm
copying parmed/charmm/psf.py -> build/lib.linux-x86_64-2.7/parmed/charmm
copying parmed/charmm/__init__.py -> build/lib.linux-x86_64-2.7/parmed/charmm
creating build/lib.linux-x86_64-2.7/parmed/formats
creating build/lib.linux-x86_64-2.7/parmed/formats/pdbx
copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-x86_64-2.7/parmed/formats/pdbx
copying parmed/formats/pdbx/__init__.py -> build/lib.linux-x86_64-2.7/parmed/formats/pdbx
copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-x86_64-2.7/parmed/formats/pdbx
copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-x86_64-2.7/parmed/formats/pdbx
creating build/lib.linux-x86_64-2.7/parmed/rosetta
copying parmed/rosetta/pose.py -> build/lib.linux-x86_64-2.7/parmed/rosetta
copying parmed/rosetta/__init__.py -> build/lib.linux-x86_64-2.7/parmed/rosetta
creating build/lib.linux-x86_64-2.7/parmed/rdkit
copying parmed/rdkit/rdkit.py -> build/lib.linux-x86_64-2.7/parmed/rdkit
copying parmed/rdkit/__init__.py -> build/lib.linux-x86_64-2.7/parmed/rdkit
copying parmed/formats/pqr.py -> build/lib.linux-x86_64-2.7/parmed/formats
copying parmed/formats/pdb.py -> build/lib.linux-x86_64-2.7/parmed/formats
copying parmed/formats/registry.py -> build/lib.linux-x86_64-2.7/parmed/formats
copying parmed/formats/mol2.py -> build/lib.linux-x86_64-2.7/parmed/formats
copying parmed/formats/psf.py -> build/lib.linux-x86_64-2.7/parmed/formats
copying parmed/formats/__init__.py -> build/lib.linux-x86_64-2.7/parmed/formats
creating build/lib.linux-x86_64-2.7/parmed/utils
creating build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_input.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_output.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/config.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-x86_64-2.7/parmed/utils/fortranformat
creating build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/utils.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/reporters.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/topsystem.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/parameters.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/__init__.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/openmm/xmlfile.py -> build/lib.linux-x86_64-2.7/parmed/openmm
copying parmed/utils/netcdf.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/decorators.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/timer.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/six.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/__init__.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/pandautils.py -> build/lib.linux-x86_64-2.7/parmed/utils
copying parmed/utils/io.py -> build/lib.linux-x86_64-2.7/parmed/utils
creating build/lib.linux-x86_64-2.7/parmed/gromacs
copying parmed/gromacs/gromacstop.py -> build/lib.linux-x86_64-2.7/parmed/gromacs
copying parmed/gromacs/gromacsgro.py -> build/lib.linux-x86_64-2.7/parmed/gromacs
copying parmed/gromacs/_cpp.py -> build/lib.linux-x86_64-2.7/parmed/gromacs
copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-x86_64-2.7/parmed/gromacs
copying parmed/gromacs/__init__.py -> build/lib.linux-x86_64-2.7/parmed/gromacs
creating build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/parmlist.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/checkvalidity.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/actions.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/logos.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/addljtype.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/parmed_cmd.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/coarsegrain.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/exceptions.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/__init__.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/add1264.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/argumentlist.py -> build/lib.linux-x86_64-2.7/parmed/tools
copying parmed/tools/changeradii.py -> build/lib.linux-x86_64-2.7/parmed/tools
creating build/lib.linux-x86_64-2.7/parmed/namd
copying parmed/namd/namdbinfiles.py -> build/lib.linux-x86_64-2.7/parmed/namd
copying parmed/namd/__init__.py -> build/lib.linux-x86_64-2.7/parmed/namd
creating build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/_guiactions.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/guitools.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/guifiletools.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/guiactions.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
copying parmed/tools/gui/__init__.py -> build/lib.linux-x86_64-2.7/parmed/tools/gui
creating build/lib.linux-x86_64-2.7/parmed/tools/simulations
copying parmed/tools/simulations/openmm.py -> build/lib.linux-x86_64-2.7/parmed/tools/simulations
copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-x86_64-2.7/parmed/tools/simulations
copying parmed/tools/simulations/__init__.py -> build/lib.linux-x86_64-2.7/parmed/tools/simulations
running build_ext
building 'parmed.amber._rdparm' extension
creating build/temp.linux-x86_64-2.7
creating build/temp.linux-x86_64-2.7/src
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/abhilash/amber16/AmberTools/src/parmed/src -I/home/abhilash/amber16/miniconda/include/python2.7 -c src/_rdparm.cpp -o build/temp.linux-x86_64-2.7/src/_rdparm.o
cc1plus: warning: command line option "-Wstrict-prototypes" is valid for Ada/C/ObjC but not for C++
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/abhilash/amber16/AmberTools/src/parmed/src -I/home/abhilash/amber16/miniconda/include/python2.7 -c src/readparm.cpp -o build/temp.linux-x86_64-2.7/src/readparm.o
cc1plus: warning: command line option "-Wstrict-prototypes" is valid for Ada/C/ObjC but not for C++
g++ -pthread -shared -L/home/abhilash/amber16/miniconda/lib -Wl,-rpath=/home/abhilash/amber16/miniconda/lib,--no-as-needed build/temp.linux-x86_64-2.7/src/_rdparm.o build/temp.linux-x86_64-2.7/src/readparm.o -L/home/abhilash/amber16/miniconda/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/parmed/amber/_rdparm.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/parmed -> build/scripts-2.7
copying and adjusting scripts/xparmed -> build/scripts-2.7
changing mode of build/scripts-2.7/parmed from 664 to 775
changing mode of build/scripts-2.7/xparmed from 664 to 775
running install_lib
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rdkit
copying build/lib.linux-x86_64-2.7/parmed/rdkit/rdkit.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rdkit
copying build/lib.linux-x86_64-2.7/parmed/rdkit/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rdkit
copying build/lib.linux-x86_64-2.7/parmed/scripts.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rosetta
copying build/lib.linux-x86_64-2.7/parmed/rosetta/pose.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rosetta
copying build/lib.linux-x86_64-2.7/parmed/rosetta/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rosetta
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/basedimension.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/unit_definitions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/quantity.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/prefix.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/mymatrix.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/unit_operators.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/standard_dimensions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/baseunit.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/unit_math.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/constants.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/unit/unit.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit
copying build/lib.linux-x86_64-2.7/parmed/vec3.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
copying build/lib.linux-x86_64-2.7/parmed/topologyobjects.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/namd
copying build/lib.linux-x86_64-2.7/parmed/namd/namdbinfiles.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/namd
copying build/lib.linux-x86_64-2.7/parmed/namd/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/namd
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/charmm/charmmcrds.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/charmm/_charmmfile.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/charmm/parameters.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/charmm/psf.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/charmm/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm
copying build/lib.linux-x86_64-2.7/parmed/parameters.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
copying build/lib.linux-x86_64-2.7/parmed/residue.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/parmlist.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/checkvalidity.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/actions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/logos.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/addljtype.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/parmed_cmd.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/coarsegrain.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/exceptions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/add1264.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/_guiactions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/guitools.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/guifiletools.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/guiactions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/_guiwidgets.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/gui/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui
copying build/lib.linux-x86_64-2.7/parmed/tools/argumentlist.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
copying build/lib.linux-x86_64-2.7/parmed/tools/changeradii.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations
copying build/lib.linux-x86_64-2.7/parmed/tools/simulations/openmm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations
copying build/lib.linux-x86_64-2.7/parmed/tools/simulations/sanderapi.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations
copying build/lib.linux-x86_64-2.7/parmed/tools/simulations/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/modeller
copying build/lib.linux-x86_64-2.7/parmed/modeller/residue.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/modeller
copying build/lib.linux-x86_64-2.7/parmed/modeller/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/modeller
copying build/lib.linux-x86_64-2.7/parmed/exceptions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/utils.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/reporters.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/topsystem.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/parameters.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
copying build/lib.linux-x86_64-2.7/parmed/openmm/xmlfile.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/mask.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/readparm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/qmmm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/cntrl.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/pb.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/ewald.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/mdin/mdin.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin
copying build/lib.linux-x86_64-2.7/parmed/amber/asciicrd.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/parameters.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/_rdparm.so -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/_chamberparm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/offlib.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/amberformat.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/_tinkerparm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/netcdffiles.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/_amberparm.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/amber/titratable_residues.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber
copying build/lib.linux-x86_64-2.7/parmed/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/netcdf.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/decorators.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/timer.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/six.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/pandautils.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
copying build/lib.linux-x86_64-2.7/parmed/utils/io.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_misc.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_input.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_output.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/FortranRecordReader.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_lexer.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_exceptions.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_edit_descriptors.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/config.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/FortranRecordWriter.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
copying build/lib.linux-x86_64-2.7/parmed/utils/fortranformat/_parser.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/formats/pqr.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/formats/pdb.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx
copying build/lib.linux-x86_64-2.7/parmed/formats/pdbx/PdbxReader.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx
copying build/lib.linux-x86_64-2.7/parmed/formats/pdbx/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx
copying build/lib.linux-x86_64-2.7/parmed/formats/pdbx/PdbxWriter.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx
copying build/lib.linux-x86_64-2.7/parmed/formats/pdbx/PdbxContainers.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx
copying build/lib.linux-x86_64-2.7/parmed/formats/registry.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/formats/mol2.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/formats/psf.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/formats/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats
copying build/lib.linux-x86_64-2.7/parmed/periodic_table.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
copying build/lib.linux-x86_64-2.7/parmed/constants.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
copying build/lib.linux-x86_64-2.7/parmed/geometry.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
copying build/lib.linux-x86_64-2.7/parmed/structure.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
copying build/lib.linux-x86_64-2.7/parmed/tinker/tinkerfiles.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
copying build/lib.linux-x86_64-2.7/parmed/tinker/system.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
copying build/lib.linux-x86_64-2.7/parmed/tinker/topologyobjects.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
copying build/lib.linux-x86_64-2.7/parmed/tinker/parameterfile.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
copying build/lib.linux-x86_64-2.7/parmed/tinker/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker
creating /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
copying build/lib.linux-x86_64-2.7/parmed/gromacs/gromacstop.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
copying build/lib.linux-x86_64-2.7/parmed/gromacs/gromacsgro.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
copying build/lib.linux-x86_64-2.7/parmed/gromacs/_cpp.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
copying build/lib.linux-x86_64-2.7/parmed/gromacs/_gromacsfile.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
copying build/lib.linux-x86_64-2.7/parmed/gromacs/__init__.py -> /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rdkit/rdkit.py to rdkit.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rdkit/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/scripts.py to scripts.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rosetta/pose.py to pose.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/rosetta/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/basedimension.py to basedimension.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/unit_definitions.py to unit_definitions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/quantity.py to quantity.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/prefix.py to prefix.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/mymatrix.py to mymatrix.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/unit_operators.py to unit_operators.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/standard_dimensions.py to standard_dimensions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/baseunit.py to baseunit.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/unit_math.py to unit_math.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/constants.py to constants.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/unit/unit.py to unit.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/vec3.py to vec3.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/topologyobjects.py to topologyobjects.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/namd/namdbinfiles.py to namdbinfiles.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/namd/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm/charmmcrds.py to charmmcrds.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm/_charmmfile.py to _charmmfile.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm/parameters.py to parameters.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm/psf.py to psf.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/charmm/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/parameters.py to parameters.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/residue.py to residue.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/parmlist.py to parmlist.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/checkvalidity.py to checkvalidity.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/actions.py to actions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/logos.py to logos.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/addljtype.py to addljtype.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/parmed_cmd.py to parmed_cmd.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/coarsegrain.py to coarsegrain.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/exceptions.py to exceptions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/add1264.py to add1264.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/_guiactions.py to _guiactions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/guitools.py to guitools.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/guifiletools.py to guifiletools.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/guiactions.py to guiactions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/_guiwidgets.py to _guiwidgets.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/gui/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/argumentlist.py to argumentlist.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/changeradii.py to changeradii.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations/openmm.py to openmm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations/sanderapi.py to sanderapi.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tools/simulations/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/modeller/residue.py to residue.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/modeller/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/exceptions.py to exceptions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/utils.py to utils.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/reporters.py to reporters.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/topsystem.py to topsystem.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/parameters.py to parameters.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/openmm/xmlfile.py to xmlfile.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mask.py to mask.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/readparm.py to readparm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/qmmm.py to qmmm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/cntrl.py to cntrl.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/pb.py to pb.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/ewald.py to ewald.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/mdin/mdin.py to mdin.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/asciicrd.py to asciicrd.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/parameters.py to parameters.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/_chamberparm.py to _chamberparm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/offlib.py to offlib.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/amberformat.py to amberformat.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/_tinkerparm.py to _tinkerparm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/netcdffiles.py to netcdffiles.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/_amberparm.py to _amberparm.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/amber/titratable_residues.py to titratable_residues.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/netcdf.py to netcdf.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/decorators.py to decorators.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/timer.py to timer.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/six.py to six.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/pandautils.py to pandautils.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/io.py to io.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_misc.py to _misc.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_input.py to _input.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_output.py to _output.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/FortranRecordReader.py to FortranRecordReader.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_lexer.py to _lexer.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_exceptions.py to _exceptions.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_edit_descriptors.py to _edit_descriptors.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/config.py to config.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/FortranRecordWriter.py to FortranRecordWriter.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/utils/fortranformat/_parser.py to _parser.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pqr.py to pqr.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdb.py to pdb.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx/PdbxReader.py to PdbxReader.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx/PdbxWriter.py to PdbxWriter.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/pdbx/PdbxContainers.py to PdbxContainers.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/registry.py to registry.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/mol2.py to mol2.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/psf.py to psf.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/formats/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/periodic_table.py to periodic_table.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/constants.py to constants.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/geometry.py to geometry.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/structure.py to structure.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker/tinkerfiles.py to tinkerfiles.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker/system.py to system.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker/topologyobjects.py to topologyobjects.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker/parameterfile.py to parameterfile.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/tinker/__init__.py to __init__.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs/gromacstop.py to gromacstop.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs/gromacsgro.py to gromacsgro.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs/_cpp.py to _cpp.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs/_gromacsfile.py to _gromacsfile.pyc
byte-compiling /home/abhilash/amber16/lib/python2.7/site-packages/parmed/gromacs/__init__.py to __init__.pyc
running install_scripts
copying build/scripts-2.7/parmed -> /home/abhilash/amber16/bin
copying build/scripts-2.7/xparmed -> /home/abhilash/amber16/bin
changing mode of /home/abhilash/amber16/bin/parmed to 775
changing mode of /home/abhilash/amber16/bin/xparmed to 775
running install_egg_info
Writing /home/abhilash/amber16/lib/python2.7/site-packages/ParmEd-2.4.0-py2.7.egg-info