Hi
Seem like your mac gets serious issue. Can you compile non-amber related programs at all?
Hai
> On Aug 27, 2016, at 12:52 PM, mirko hennig <mirkohennig.yahoo.com> wrote:
>
> hi jason
>
>
>
>> What happens if you run the fftw configure script by hand?
>
> ./configure in the ~/AmberTools/src/fftw-3.3 subdirectory doesn't go anywhere. never finishes on its own, no errors...also, no time stamp gets updated, the fftw3_config.log remains an empty file (not with the current date/time)
> thanksM
>
>
>> On Aug 18, 2016, at 5:49 PM, mirko hennig <mirkohennig.yahoo.com> wrote:
>>
>> thanks Jason.
>> response to make in a terminal is:
>> make: *** No targets specified and no makefile found. Stop.
>>
>> I've tried a couple more things and what you're suggesting makes sense (that some input would be required yet it's non-interactive)
>> I saw that you can use a -nofftw3 flag, so I've tried that....
>>
>> ./configure -macAccelerate -nofftw3 --with-netcdf /opt/local gnu
>>
>> now gets me to:
>>
>> Skipping configuration of FFTW3
>> Configuring MTK++ (may be time-consuming)...
>>
>> and again, you can wait and wait and wait some more.
>> the mtkpp_config.log file looks exactly like the netcdf log did before, last line reads:
>> checking whether make sets $(MAKE)...
>>
>> however, this time (after manually terminating the process) configure actually finishes:
>>
>> ^C Warning: MTK++ configure returned 1
>> MTK++ configure failed! Check the mtkpp_config.log file
>> in the /Users/mirko/my_CNS/Amber/amber14/AmberTools/src directory.
>> MTK++ will not be built alongside AmberTools.
>>
>> The configuration file, config.h, was successfully created.
>>
>> I've attached the config.h file in case it may be useful. Desperate as I am, I've tried to execute 'make install'; all looks ok for a while until it hits:
>>
>> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Math::VectorReal.3pm
>> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Parse::Yapp.3
>> Installing /Users/mirko/my_CNS/Amber/amber14/AmberTools/src/FEW/additional_libs/PerlMol/share/man/man3/Statistics::Regression.3pm
>> Darwin_15.6.0
>> Darwin_15.6.0
>>
>> the latter 'Darwin_15.6.0' is then repeated endlessly until one kills make manually.
>> ^Cmake[3]: *** [doc_site_install] Interrupt: 2
>> make[2]: *** [install] Interrupt: 2
>> make[1]: *** [serial] Interrupt: 2
>> Darwin_15.6.0
>> make: *** [install] Interrupt: 2
>>
>> Btw, I had also downloaded AmberTools16 at some point, but everything is exactly the same
>> best
>> Mirko
>>
>> From: Jason Swails <jason.swails.gmail.com>
>> To: mirko hennig <mirkohennig.yahoo.com>; AMBER Mailing List <amber.ambermd.org>
>> Cc: "david.case.rutgers.edu" <david.case.rutgers.edu>
>> Sent: Thursday, August 18, 2016 5:18 AM
>> Subject: Re: [AMBER] [AMBER} NetCDF installation problem on mac OS X El Capitan
>>
>> I've seen this happen before when Xcode opens up a dialog (asking you to accept the EULA or something of that ilk). Since it's non-interactive, configure just sits there for ages waiting for user input that never comes.
>>
>> Try just typing "make" in an open terminal and paste the response you get here.
>>
>> HTH,
>> Jason
>>
>>
>>> On Tue, Aug 16, 2016 at 10:53 AM, mirko hennig <mirkohennig.yahoo.com> wrote:
>>> unfortunately, not much information to work with...
>>> Any clue from the $AMBERHOME/AmberTools/src/ fftw3_config.log file? Does
>>> it end with a line like this?
>>
>>> checking whether make sets $(MAKE)...
>>
>> fftw3_config.log is an empty file:-rw-r--r-- 1 mirko staff 0 Aug 16 07:12 fftw3_config.logdrwxr-xr-x 60 mirko staff 2040 Aug 16 07:12 .drwxr-xr-x. 41 mirko staff 1394 Aug 16 07:13 fftw-3.3
>> many thanks-mirko
>>
>>
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>> --
>> Jason M. Swails
>>
>>
>> <config.h>
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Received on Sat Aug 27 2016 - 15:30:02 PDT
