Re: [AMBER] Problem when visualizing bonds in VMD

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From: Nhai <nhai.qn.gmail.com>
Date: Fri, 19 Aug 2016 17:53:17 -0400

For analysis I mostly use cpptraj.

hbond command is quite handy

http://www.amber.utah.edu/AMBER-workshop/London-2015/Hbond/

Hai

> On Aug 19, 2016, at 4:30 PM, Xiaoliu Zhang <xzhan91.lsu.edu> wrote:
>
> Thank you, Hai.
>
>
> Apart from visualization, I also need to calculate the number of hydrogen bonds in each frame. I only know that VMD has this function. Is there any other ways to achieve this?
>
>
> Thanks again!
>
> Xiaoliu
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Received on Fri Aug 19 2016 - 15:00:02 PDT