can you change "dssp.gnu" to "dssp.out"?
Please check the manual carefully since it has various options.
Hai
On Fri, Aug 19, 2016 at 1:58 AM, Saman Yousuf ali <
saman.yousufali64.yahoo.com> wrote:
> I tried dssp command using cpptraj,
> secstruct :1-42 dssp.gnu sumout dssp.sum.agr
> I got secondary structure plot but how we can convert this in percentages
> of protein secondary structure. I have attached sample plot here.
>
> Best Regards,
> Saman Yousuf Ali
>
>
>
> On Friday, August 19, 2016 10:32 AM, Nhai <nhai.qn.gmail.com> wrote:
>
>
> You can try dssp command in cpptraj.
>
> Hai
>
> > On Aug 19, 2016, at 12:17 AM, Saman Yousuf ali <
> saman.yousufali64.yahoo.com> wrote:
> >
> > Dear all, I want to know the percentages of secondary structure for my
> protein that I have already done simulation on with AMBER14 but I need the
> commands for the percentages. Best Regards, Saman Yousuf Ali
>
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Fri Aug 19 2016 - 08:00:03 PDT
