I tried your suggestion...
First I loaded pdb file using the file type pdb, and then the VMD OpenGL display gave a visualization of my box since the pdb file already includes the coordinates.
Then, I tried to load inpcrd file for the pdb file using the file type amber coordinates ( I also tried to load it under amber restart type ). However, it can't cover the coordinate information in the pdb file, and there's no change for the graph.
I also tried to load the mdcrd file for the pdb file and still no change took place. It can't show the trajectory.
It seems that I should remove the coordinate information in the pdb file first... Do you know how to do this?
Thank you!
Xiaoliu
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Received on Thu Aug 18 2016 - 15:00:02 PDT
