Hi.
We are just trying to fold the long chains of this protein.
Best regards,
Li Zhe
________________________________
From: Hai Nguyen <nhai.qn.gmail.com>
Sent: Thursday, 18 August, 2016 12:11:05 PM
To: AMBER Mailing List
Subject: Re: [AMBER] RMSd
hi
What do you want to learn from this type of simulation?
Hai
On Thu, Aug 18, 2016 at 12:08 AM, Wong Li Zhe <Wong.LiZhe.student.imu.edu.my
> wrote:
> Dear AMBER users,
>
>
> I am currently simulating a protein (1304 amino acids) in vacuo without
> restraints.
>
> >From the RMSd versus time plot, the RMSd is about 140 angstroms!
>
> I wonder is this observation still consider as normal?
>
> As from the tutorial, this is considered as 'blown up'.
>
> Any inputs will be much appreciated.
>
>
> Thank you.
>
>
> Best regards,
>
> Li Zhe
>
>
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[
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Come visit us at the September Open/Info Days!
More info at
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[
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Come visit us at the September Open/Info Days!
More info at
http://ask.imu.edu.my/openday
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Received on Wed Aug 17 2016 - 21:30:04 PDT
