From: Wong Li Zhe <Wong.LiZhe.student.imu.edu.my>
Date: Thu, 18 Aug 2016 04:08:05 +0000

Dear AMBER users,

I am currently simulating a protein (1304 amino acids) in vacuo without restraints.

>From the RMSd versus time plot, the RMSd is about 140 angstroms!

I wonder is this observation still consider as normal?

As from the tutorial, this is considered as 'blown up'.

Any inputs will be much appreciated.

Thank you.

Best regards,

Li Zhe

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Received on Wed Aug 17 2016 - 21:30:03 PDT
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