Dear AMBER users,
I am currently simulating a protein (1304 amino acids) in vacuo without restraints.
>From the RMSd versus time plot, the RMSd is about 140 angstroms!
I wonder is this observation still consider as normal?
As from the tutorial, this is considered as 'blown up'.
Any inputs will be much appreciated.
Thank you.
Best regards,
Li Zhe
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Received on Wed Aug 17 2016 - 21:30:03 PDT
