Re: [AMBER] Combining single structure NMR pdb files into an ensemble.

From: Erik Davis <erikd.g.clemson.edu>
Date: Wed, 17 Aug 2016 09:05:24 -0400

Thank you!

On Tue, Aug 16, 2016 at 4:45 PM, Hai Nguyen <nhai.qn.gmail.com> wrote:

> you can use cpptraj with keyword "model"
>
> parm my.pdb
> trajin my.pdb
> trajin another.pdb
> trajout out.pdb model
>
> I suggest to upgradet to AmberTools16
> and check manual: http://ambermd.org/doc12/Amber16.pdf (page 561, trajout
> command)
>
> Hai
>
> On Tue, Aug 16, 2016 at 4:38 PM, Erik Davis <erikd.g.clemson.edu> wrote:
>
> > Hello
> >
> > I need some help combining single structure NMR pdb files into an
> ensemble
> > for ensemble analysis I have looked through the manual, but haven't
> found
> > anything. Does amber14 have this capability? Can anyone direct me
> towards a
> > quick solution.
> >
> > Regards,
> >
> > --
> > Erik V. Davis
> > Clemson University
> >
> > 攀登山脉
> > Pāndēng shānmài
> >
> > "Only one who attempts the absurd can achieve the impossible"
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> >
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>



-- 
Erik V. Davis
Clemson University
攀登山脉
Pāndēng shānmài
"Only one who attempts the absurd can achieve the impossible"
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Received on Wed Aug 17 2016 - 06:30:03 PDT
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