On Mon, Aug 15, 2016 at 1:03 PM, mirko hennig <mirkohennig.yahoo.com> wrote:
> so far ...not much...
> [Mirkos-MacBook-Pro:AmberTools/src/netcdf-4.3.0] mirko% make installmake:
> Nothing to be done for `install'.
> [Mirkos-MacBook-Pro:AmberTools/src/netcdf-fortran-4.2] mirko% make
> installmake: *** No rule to make target `install'. Stop.
>
Sorry, I forgot that you stuck at the ./configure step, so the "make
install" did not work.
Like Dave said, it's very rare issue that no one met before.
So I suggest
1. follow Dave' email first
2. then try a fresh installation. I recommend to install ambertools16:
http://ambermd.org/AmberTools16-get.html
Hai
thanks
> mirko
> From: Hai Nguyen <nhai.qn.gmail.com>
> To: mirko hennig <mirkohennig.yahoo.com>; AMBER Mailing List <
> amber.ambermd.org>
> Sent: Monday, August 15, 2016 9:50 AM
> Subject: Re: [AMBER] [AMBER} NetCDF installation problem on mac OS X El
> Capitan
>
> hi,
>
> what happens if you
>
> cd $AMBERHOME/AmberTools/src/netcdf-fortran-4.2
> make install
>
> cd $AMBERHOME/AmberTools/src/netcdf-4.3.0
> make install
>
> Hai
>
>
> On Mon, Aug 15, 2016 at 12:26 PM, mirko hennig <mirkohennig.yahoo.com>
> wrote:
>
> > Dear allI'm still trying to install Ambertools15 and Amber14 on a Macbook
> > pro (OS X 10.11.6) and continue to have issues when executing ./configure
> > w/ and w/o -macAccelerate using either gnu or clang compilers.
> > Specifically, the installation hangs when configuring NetCDF:
> > Checking NetCDF... Using bundled NetCDF library. Starting NetCDF build.
> > Configuring NetCDF C interface (may be time-consuming)...
> > meaning that ./configure never finishes (no errors, no prompt after hours
> > and hours of waiting which has been described before by myself and on Mon
> > Nov 30 2015 "mac hangs when compile amber tools on el capitan" by YY)
> but
> > rather has to be manually killed. Every test before like gcc, g++,
> gfortran
> > etc passes.
> > I have attached a txt file illustrating the outputs of the
> > corresponding netcdf_config.log and the gcc -v output.
> > the netcdf versions that appear in ~/amber14/AmberTools/src
> > arenetcdf-4.3.0 andnetcdf-fortran-4.2
> > 'port list installed active' returnsnetcdf .4.4.1
> > science/netcdfnetcdf-fortran .4.4.3
> > science/netcdf-fortran
> > what really confuses me is the fact that 'port list installed INACTIVE'
> > lists the same versions (netcdf-4.4.1 and netcdf-fortran-4.4.3) and the
> > latter netcdf's are only found under e.g:[Mirkos-MacBook-Pro:/opt/local]
> > mirko% find . -name netcdf-fortran -print./var/macports/
> > distfiles/netcdf-fortran./var/macports/software/netcdf-
> > fortran./var/macports/sources/rsync.macports.org/release/
> > tarballs/ports/science/netcdf-fortranwhich makes using the
> > '--with-netcdf' flag difficult.any help would be greatly appreciatedmany
> > thanks-mirko
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Received on Mon Aug 15 2016 - 10:30:03 PDT
