Hi everyone!
I am trying to install amber tools 16 but am getting error in the "make
install" step.
I am trying a serial build with gnu (./compile gnu).
I allowed the updates and other downloads that amber tools16 asked for.
To best of my knowledge there was no previous error.
I did source amber.sh (as we have bash) before install step.
I tried searching but was unable to solve the issue. If i have missed
some post which could be of help, please let me know.
We already have amber14 working on the same machine.
I am pasting the last few lines before the error.
Please help.
g++ -DHAVE_CONFIG_H -I. -I/home/abhilash/amber16/include -fPIC -c -o
umbrella.o umbrella.cc
g++ -DHAVE_CONFIG_H -I. -I/home/abhilash/amber16/include -fPIC -c -o
dimension.o dimension.cc
g++ -DHAVE_CONFIG_H -I. -I/home/abhilash/amber16/include -fPIC -c -o
utils.o utils.cc
g++ -DHAVE_CONFIG_H -I. -I/home/abhilash/amber16/include -fPIC -c -o
main.o main.cc
g++ -fPIC -o nfe-umbrella-slice umbrella.o dimension.o utils.o main.o
/home/abhilash/amber16/lib/libnetcdf.a
mv nfe-umbrella-slice /home/abhilash/amber16/bin
make[2]: Leaving directory
`/home/abhilash/amber16/AmberTools/src/nfe-umbrella-slice'
(if [ "no" = "no" ]; then \
make python_serial ;\
fi;\
)
make[2]: Entering directory `/home/abhilash/amber16/AmberTools/src'
(cd parmed && /home/abhilash/amber16/bin/amber.python setup.py install
--no-setuptools -f --prefix=/home/abhilash/amber16
--install-scripts=/home/abhilash/amber16/bin)
/bin/sh: line 1: 15298 Segmentation fault (core dumped)
/home/abhilash/amber16/bin/amber.python setup.py install --no-setuptools -f
--prefix=/home/abhilash/amber16 --install-scripts=/home/abhilash/amber16/bin
make[2]: *** [parmed] Error 139
make[2]: Leaving directory `/home/abhilash/amber16/AmberTools/src'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home/abhilash/amber16/AmberTools/src'
make: *** [install] Error 2
regards
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Received on Thu Aug 11 2016 - 08:00:02 PDT
