I am using Python 2 for my major work.
It works fine now.
cheers.
On 07/30/2016 10:47 AM, Hai Nguyen wrote:
> Are you using Python 3 for your main work?
>
> probably you need to activate the python 2 kernel
>
> # in bash terminal
> amber.python -m ipykernel install --user
>
> # then open the notebook
> amber.jupyter notebook your_notebook.ipynb
>
> # choose Python 2 kernel
> https://codingnetworker.com/wp-content/uploads/2015/11/jupyter_about_notebook_kernel-web-1024x370.png
>
>
> *Note*: as stated in manual, amber use python 2 as default version because
> amber can be used with phenix or rosetta, which only support py2.
>
> If you want to use python 3, it's fine. You can try:
>
> cd $AMBERHOME
> bash ./AmberTools/src/configure_python -v 3
> # and do normal installation
>
> PS: The above "complicated" step only happens if users have different
> Python versions.
>
> Hai
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Received on Sat Jul 30 2016 - 02:30:02 PDT
