Dear users,
I am working protein RNA complexes and I like to calculate the number of
salt bridges formed between RNA and protein.
I went through Hydrogen bond analysis by Daniel R. Roe
(
http://www.amber.utah.edu/AMBER-workshop/London-2015/Hbond/)
I calculated the water mediated interactions using
hbond hb1 :1-236 out list.out avgout avg.out solventdonor :WAT.O
solventacceptor :WAT.O solvout sol_list.out bridgeout orf_bridge.out
similarly I like to calculate salt bridges between protein RNA.
It will be greatly helpful with suggestions in this regards.
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Received on Sat Jul 30 2016 - 00:30:04 PDT
