This is bizarre. I have the latest updates of AmberTools16.
$ ./update_amber --show-applied-patches
> AmberTools 16 Applied Patches:
> ------------------------------
> update.1 (modifies LEaP)
> update.2 (modifies 3D-RISM, codes, in, NAB, sander, and, rism3d.snglpnt)
> update.3 (modifies cpinutil.py)
> update.4 (modifies test, cases, for, the, BSC1, DNA, force, field)
> update.5 (modifies configure2, Makefiles)
> update.6 (modifies configure2)
> update.7 (modifies LEaP)
> update.8 (modifies antechamber)
> update.9 (modifies sander, nfe-umbrella-slice)
> update.10 (modifies reduce, cpptraj, cphstats)
>
But I still get this error:
ambmask -p crystal_complex.prmtop -c crystal_complex.inpcrd -out pdb -find
> "( :27-29 | :32 | :35 | :48 | :50 | :62 | :75 | :97-103 | :106 | :150-151 |
> :153 | :164-165 | :346 )"
> | New format PARM file being parsed.
> | Version = 1.000 Date = 07/25/16 Time = 00:40:26
> natom = 5606
> nres = 346
> original : ==( :27-29 | :32 | :35 | :48 | :50 | :62 | :75 | :97-103 | :106
> | :150-151 | :153;==
> tokenized:
> ==([:27-29]|[:32]|[:35]|[:48]|[:50]|[:62]|[:75]|[:97-103]|[:106]|[:150-151]|[:153];==
> postfix :
> ==[:27-29][:32]|[:35]|[:48]|[:50]|[:62]|[:75]|[:97-103]|[:106]|[:150-151]|[:153]|(;==
> Error in group input::atommask.f::eval
> unknown symbol while evaluating RPN
>
When​ I cut the restraintmask after "151" it prints the pdb file.
--
======================================================================
Thomas Evangelidis
Research Specialist
CEITEC - Central European Institute of Technology
Masaryk University
Kamenice 5/A35/1S081,
62500 Brno, Czech Republic
email: tevang.pharm.uoa.gr
tevang3.gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
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Received on Mon Jul 25 2016 - 11:30:02 PDT
