Hi ! Use make-na server.......
http://structure.usc.edu/make-na/server.html
Best
indrajit
--------------------------------------------------------------------------------------------------------------
*Indrajit Deb*
alternate emails: indrajitdeb81.gmail.com, idbmbg_s.caluniv.ac.in
*Present Position*
International Centre for Genetic Engineering and Biotechnology (ICGEB,
Italy) SMART Fellow,
Department of Structural Chemistry and Biology of Nucleic Acids,
Institute of Bioorganic Chemistry (IBCh),
Polish Academy of Sciences (PAS).
European Center for Bioinformatics and Genomics (ECBiG) Campus (
R
oom: 2.6.28
).
Z. Noskowskiego Str. 12/14.
Poznan 61-704, Poland.
Phone: +48616653042, Personal Mobile: +48662513522
*Previous Position*
Ph.D Student,
Department of Biophysics, Molecular Biology and Bioinformatics, University
of Calcutta (CU), 92 APC Road, Kolkata - 700009, India. Phone:
+913323508386 (extn. 329, 321), Fax: +913323519755. Personal Mobile:
+919239202278
On Sat, Jul 23, 2016 at 2:02 PM, ABHIJEET CHOWDHURY <
f2013854.pilani.bits-pilani.ac.in> wrote:
> Dear AMBER users,
>
> How do i create a RNA duplex if both strands are not entirely complementary
> to each other?
>
> I was thinking of using wc_helix() but then it doesn't makes much sense as
> it would use Watson-Crick base pairing on the non-complementary base pairs
> too.
>
> If anybody could suggest something that would be helpful.
>
> Thank You
>
> Regards,
> Abhijeet Chowdhury
> Student
> M.Sc.(Hons.) Biological Sciences
> B.E.(Hons.) Chemical Engineering
> Birla Institute of Technology and Science (BITS),
> Pilani 333 001, Rajasthan, INDIA
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sat Jul 23 2016 - 05:30:04 PDT
