[AMBER] adding non-standard residue to RNA strand

From: Martina Devi <martinadevi2011.gmail.com>
Date: Sat, 9 Jul 2016 22:51:28 +0530

Dear Amber Users

I have the given mol2 generated from RED server.I tried incorporating the
given mol2 with the RNA strand. Though the non-standard manages to load
through leap it does not mesh with the RNA strand.

a=loadpdb a.pdb
OAU=loadmol2 OAU.mol2
a=loadpdb a.pdb

Do I need to edit the mol2 manually to lead to its successful incorporation?

Thanks in advance

Regards
Martina


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Received on Sat Jul 09 2016 - 10:30:02 PDT