[AMBER] Stuck somewhere using antechamber

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From: Xiaoyu Wang <xwang181.hawk.iit.edu>
Date: Wed, 6 Jul 2016 18:00:37 -0500

Hello,

I was using antechamber in the toolkit to generate force field and connectivity. Everything seems to be okay but it just got stuck somewhere on running sqm without any error. I have checked all the file it dumped out, but I did not find any error. It is a large molecule with 972 atoms. So is this the reason? Here, I attach the pdb file. Can anyone help me with this?

Thanks
Andy

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chemical/x-pdb attachment: jp0637173_si_001.pdb

Received on Wed Jul 06 2016 - 16:30:02 PDT