Thank you.
On Thu, May 5, 2016 at 1:16 PM, <hannes.loeffler.stfc.ac.uk> wrote:
> What is most likely not recognized, you don't give any details about that,
> is that the residue and atom names in your PDB have no correspondence in
> the leap templates. So you will have to figure out what those are and
> modify your PDB to exactly match those e.g. $AMBERHOME/dat/leap/prep/
> nucleic10.in
>
> ________________________________________
> From: Ramkumar B [bramkumar1993.gmail.com]
> Sent: 05 May 2016 08:20
> To: amber.ambermd.org
> Subject: [AMBER] xLeap
>
> Hi,
>
> There is a tool in nanohub to convert caDNAno files to pdb and psf format.
>
> https://nanohub.org/resources/cadnanocvrt
>
> The pdb files generated from this tool aren't recognized by xLeaP. I have
> attached a pdb file generated from the tool.
>
>
>
> Best,
> Ramkumar.B
>
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>
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Ramkumar.B
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Received on Thu May 05 2016 - 05:00:03 PDT
