[AMBER] cpptraj rms fit to rst file

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Tue, 3 May 2016 21:22:04 -0700

Is this right? I am not seeing actual fitting going on, as determined by
loading resulting pdb's sequentially in VMD and NGL, although the
coodinates are transformed. My 3-base molecule is flapping a lot, and I
want to fix it on the central base.

Thanks,

Bill 

---
parm cat.top
trajin restrt
reference cat_min.rst
rms :2
trajout restrt_rms.pdb
run
---
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 03 2016 - 21:30:03 PDT
Custom Search