Hi,
The problem might be due to the incorrect numbering of your ions in the initial pdb file. Try to renumber these ions as 6351, 6352,…, instead of 1, 2, … . This will probably fix the problem.
Best,
Batuhan
> On 25 Apr 2016, at 14:17, Shreeramesh <shreeramesh.gmail.com> wrote:
>
> <Archive.zip>
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Received on Mon Apr 25 2016 - 07:00:03 PDT
