[AMBER] How to rebuild pH-based trajectory files from CpHMD restarted simulations

From: Elisa Pieri <elisa.pieri90.gmail.com>
Date: Mon, 25 Apr 2016 11:39:46 +0200

Dear Amber users,

I ran CpHMD silmuations in explicit solvent and pH replica exchange. Due to
the waltime, I ran them splitting the simulations in two parts. So now I
have trajectory files named

traj.ph{X}.nc
traj.phBIS{X}.nc

where X spans from 01 to 12.
I want to merge the two parts and then rebuild the trajectory file (i.e the
snapshots) for each pH value. I made a few attempts with cpptraj, but I
didn't get results. Do you know how to solve this?

Thank you,
Elisa
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Received on Mon Apr 25 2016 - 03:00:03 PDT
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