> I guess NGL requires more modern web browser. It works fine with my
Chrome browser (Version 49.0.2623.112 m):
Odd, my Chrome is Version 49.0.2623.87 (64-bit) which is not markedly
old, and it's the same in Safari.
On 4/21/16 7:59 PM, Hai Nguyen wrote:
> On Thu, Apr 21, 2016 at 9:37 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> Thanks Hai,
>>
>> Is it yours? It's odd no one claims credit on it.
>
> No it's not mine. It was written by Alexander Rose: https://github.com/arose
>
>
>
>> The embedded demo
>> fails to display the molecule by the way.
>>
>>
> I guess NGL requires more modern web browser. It works fine with my Chrome
> browser (Version 49.0.2623.112 m):
> https://github.com/hainm/amber_things/blob/master/things/ngl/website/ngl.png
>
> Not sure if this is related to your interest, but in AMBER16 (soon), both
> sander and cpptraj have Python API,
> which makes them more flexible to plug to other language like Python or
> Javascript.
>
> Hai
>
>
>> Bill
>>
>> On 4/21/16 6:17 PM, Hai Nguyen wrote:
>>> Hi Bill
>>>
>>>> Or heard of javascript for rendering a live trajectory on a web page?
>>> I don't know if there is one like this. But for rendering trajectory on
>>> web, you can check NGL viewer: *http://arose.github.io/ngl/
>>> <http://arose.github.io/ngl/>*
>>>
>>> (Choose *Examples --> gro_trajectory*). It has nice API and you can
>> easily
>>> adapt its code.
>>>
>>> Hai
>>>
>>> On Thu, Apr 21, 2016 at 8:25 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>
>>>> For interactivity, I'd have sander read forces and write measurements
>>>> from/to sockets at each step, and I'd perhaps want to build in
>>>> geometrical analysis to quickly get, say, the instantaneous angle
>>>> between two DNA bases, although pipelining a few hundred atoms through
>>>> cpptraj might not take too many milliseconds. Then I'd need to figure
>>>> how to map the user clicks and drags happening on the totally different
>>>> photos on my web page to reasonable forces in the simulation. I'd want
>>>> to display the dynamics occurring as well, perhaps charging high prices
>>>> to see behind the scenes :-.) A feedback time of 1 sec (running a few
>>>> steps after the mouse click's impact) might suffice.
>>>>
>>>> Has anyone tried adding structure analysis to sander? Or heard of
>>>> javascript for rendering a live trajectory on a web page?
>>>>
>>>> Bill
>>>>
>>>> On 4/19/16 12:19 PM, Bill Ross wrote:
>>>>> I have been working on an artificial intelligence that aims to
>>>>> communicate with pictures:
>>>>>
>>>>> http://phobrain.com
>>>>>
>>>>> The idea is to simulate presence on the level of what you feel looking
>>>>> into a dog's eyes, a modified Turing Test if you will.
>>>>>
>>>>> Like in the Wizard of Oz, I have been looking for parts for my
>>>>> character, and I'm thinking an md simulation might serve as a heart.
>> For
>>>>> this, I would need to pull data from the live simulation, and ideally
>>>>> introduce forces derived from the clicks of users on the web page. Has
>>>>> anyone done this with AMBER or another md program?
>>>>>
>>>>> Thanks,
>>>>> Bill
>>>>>
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Received on Thu Apr 21 2016 - 20:30:04 PDT
