For interactivity, I'd have sander read forces and write measurements
from/to sockets at each step, and I'd perhaps want to build in
geometrical analysis to quickly get, say, the instantaneous angle
between two DNA bases, although pipelining a few hundred atoms through
cpptraj might not take too many milliseconds. Then I'd need to figure
how to map the user clicks and drags happening on the totally different
photos on my web page to reasonable forces in the simulation. I'd want
to display the dynamics occurring as well, perhaps charging high prices
to see behind the scenes :-.) A feedback time of 1 sec (running a few
steps after the mouse click's impact) might suffice.
Has anyone tried adding structure analysis to sander? Or heard of
javascript for rendering a live trajectory on a web page?
Bill
On 4/19/16 12:19 PM, Bill Ross wrote:
> I have been working on an artificial intelligence that aims to
> communicate with pictures:
>
> http://phobrain.com
>
> The idea is to simulate presence on the level of what you feel looking
> into a dog's eyes, a modified Turing Test if you will.
>
> Like in the Wizard of Oz, I have been looking for parts for my
> character, and I'm thinking an md simulation might serve as a heart. For
> this, I would need to pull data from the live simulation, and ideally
> introduce forces derived from the clicks of users on the web page. Has
> anyone done this with AMBER or another md program?
>
> Thanks,
> Bill
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Apr 21 2016 - 17:30:03 PDT
