Re: [AMBER] building DNA with extruded base

From: David A Case <david.case.rutgers.edu>
Date: Tue, 19 Apr 2016 14:24:03 -0400

On Tue, Apr 19, 2016, giulia palermo wrote:
>
> I am trying to build a double stranded DNA with Nucleic acid builder
> including an EXTRUDED guanine.
> Is it possible to do it with NAB?

It would not be easy with the building capabilities in NAB. I'd suggest
finding an example of an extruded guanine in the PDB, and use that fragment to
build what you want. The frames capability in NAB might be helpful, or you
might just want to do it interactively in a visualization program.

...dac


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Received on Tue Apr 19 2016 - 11:30:05 PDT
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