Re: [AMBER] want to ask you about MMPBSA.py .mdcrd file

From: Ayesha Kanwal <ayesha_comsian.hotmail.com>
Date: Tue, 19 Apr 2016 14:21:44 +0500

Dear Shahid,i didn't get your point from : (thats why there are four or more trajectory files
 resulting from each .mdin file.
 These files are later combined in for doing further analysis such as mmpbsa).kindly explain it to me .


> From: mohammad.shahid.gmail.com
> Date: Tue, 19 Apr 2016 10:12:40 +0200
> To: amber.ambermd.org
> Subject: Re: [AMBER] want to ask you about MMPBSA.py .mdcrd file
>
> Hi,
>
> The trajectory files are split into multiple files due to restarting md
> from restart files, thats why there are four or more trajectory files
> resulting from each .mdin file.
> These files are later combined in for doing further analysis such as mmpbsa
> etc.
>
> Best regards,
>
> --
> Shahid.
>
>
>
> On Tue, Apr 19, 2016 at 9:55 AM, Ayesha Kanwal <ayesha_comsian.hotmail.com>
> wrote:
>
> > Hi all,
> > i have a question about amber advanced tutorial for .mdcrd. there is a
> > single file of mdcrd named prod.mdcrd and four parameter files. i want to
> > know .mdcrd traj. file is for which parameter file ?
> > or i have to put four .mdcrd files for all four parameter files?
> > if in your tutorial there is only one .mdcrd file then what is it's
> > purpose ?
> >
> >
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Received on Tue Apr 19 2016 - 02:30:03 PDT
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