Re: [AMBER] Regarding MM-PBSA calculation

From: Jason Swails <jason.swails.gmail.com>
Date: Fri, 8 Apr 2016 08:12:32 -0400

On Fri, Apr 8, 2016 at 6:44 AM, Sivanandam M <sivanandamphy.gmail.com>
wrote:

> Dear Amber Users,
> We calculated MM-PBSA free energy calculation
> of one protein-ligand complex using Ambertools 14. That gives the following
> error. Please help us to fix this problem.
>
> Error is
>
>
> *LengthError: length mismatch in energy vectorsExiting. All files have been
> retained.*
>

​Try setting netcdf=1 in the &general section of the MMPBSA.py input file.

HTH,
Jason

-- 
Jason M. Swails
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Received on Fri Apr 08 2016 - 05:30:06 PDT
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