[AMBER] Amber MD simulation - viewing artifacts in VMD?

From: Enrique Frio <enrique.frio.gmail.com>
Date: Tue, 29 Mar 2016 20:05:05 +0800

​​Hello all,

An MD simulation in Amber14 looks weird in VMD 1.9.2 but looks perfectly
fine in Chimera.

There seems to be a "tail" and some protruding parts that appear to trace a
path below (and sometimes in other places elsewhere) the protein being
simulated (this is part of the equilibriation stage). Please see attached
photo.

Any ideas/ advice? Thanks!

​​--
Cheers,
Enrique
<http://www.rbc.org/odb/odb.shtml>


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trajectory_artefact_amber_viewed_in_VMD1-9-2.png
(image/png attachment: trajectory_artefact_amber_viewed_in_VMD1-9-2.png)

Received on Tue Mar 29 2016 - 05:30:04 PDT
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