Also the only files in $AMBERHOME/bin are:
[root.localhost bin]# ls
nc-config nccopy ncdump ncgen ncgen3 nf-config pmemd.cuda
pmemd.cuda_SPFP
[root.localhost bin]#
Was there a failed install somewhere?
Thanks!
Enrique
On Fri, Mar 18, 2016 at 8:48 PM, Enrique Frio <enrique.frio.gmail.com>
wrote:
> Unexpected glitch - configure, make install, and make tests were ok. The
> fresh install came from the tar files of Amber14 and Ambertools15, which
> both uncompressed into the dir "amber14".
>
> All updates were successful.
>
> Now *tleap* seems to be having problems:
>
> ================
>
> [root.localhost lib]# /opt/amber/amber14/AmberTools/test/leap/tleap
> ../../bin/teLeap: Command not found.
>
> ============
>
> Thanks for any suggestions.
>
> Cheers,
> Enrique
>
> On Fri, Mar 18, 2016 at 9:25 AM, Enrique Frio <enrique.frio.gmail.com>
> wrote:
>
>> Thanks, I figured it out.
>>
>> rm-rf apparently did not remove a previous .update directory (hidden?)
>> within my amberhome dir for some reason. This showed the updates though the
>> rest of the dir was deleted for the fresh install, and is perhaps why
>> amber_update reported "no available updates."
>>
>> I compiled it successfully - thanks for everything.
>>
>> Cheers,
>> Enrique
>>
>>
>> On Fri, Mar 18, 2016 at 7:05 AM, Jason Swails <jason.swails.gmail.com>
>> wrote:
>>
>>> You need to recompile after updating. Just updating is not enough
>>> (because
>>> all it changes is source code). So try reconfiguring and recompiling.
>>>
>>> HTH,
>>> Jason
>>>
>>> On Thu, Mar 17, 2016 at 3:55 PM, Enrique Frio <enrique.frio.gmail.com>
>>> wrote:
>>>
>>> > Thanks, sir. The current updates are shown below. I did use the
>>> original
>>> > tar file for Amber14, and downloaded Ambertools15 recently. I presume
>>> that
>>> > the applied patches below are the latest?
>>> >
>>> > ===========
>>> > [root.localhost amber14]# ./update_amber --update
>>> > Preparing to apply updates... please wait.
>>> > No new updates available for AmberTools 15
>>> > No new updates available for Amber 14
>>> >
>>> > [root.localhost amber14]# ./update_amber --show-applied-patches
>>> > AmberTools 15 Applied Patches:
>>> > ------------------------------
>>> > update.1 (modifies MMPBSA.py, ParmEd, cpptraj)
>>> > update.2 (modifies AmberTools, CUDA)
>>> > update.3 (modifies nab, sff)
>>> > update.4 (modifies Leap, Lipid14, force, field)
>>> > update.5 (modifies ParmEd)
>>> > update.6 (modifies pmemd.cuda)
>>> >
>>> >
>>> > Amber 14 Applied Patches:
>>> > -------------------------
>>> > update.1, update.2, update.3, update.4, update.5, update.6, update.7,
>>> > update.8, update.9, update.10,
>>> > update.11, update.12, update.13
>>> >
>>> > ===========
>>> >
>>> > On Thu, Mar 17, 2016 at 11:02 PM, Ross Walker <ross.rosswalker.co.uk>
>>> > wrote:
>>> >
>>> > > Hi Enrique
>>> > >
>>> > > You did not apply the latest updates - or rather the updates failed
>>> to be
>>> > > applied. Try:
>>> > >
>>> > > cd $AMBERHOME
>>> > > ./update_amber --update
>>> > >
>>> > > Then try again. If that does not work then something is messed up
>>> your
>>> > > AMBER installation. I would suggest going back to the original tar
>>> files
>>> > > and trying again, saying yes to all updated.
>>> > >
>>> > > All the best
>>> > > Ross
>>> > >
>>> > > > On Mar 17, 2016, at 04:02, Enrique Frio <enrique.frio.gmail.com>
>>> > wrote:
>>> > > >
>>> > > > Hello all,
>>> > > >
>>> > > > Amber's current CUDA supported is 7.5, as stated in the main web
>>> page,
>>> > > > right?
>>> > > >
>>> > > > I have CUDA Version 7.5.18; single GTX780 (not Ti) GPU.
>>> > > >
>>> > > > Amber 14 and Ambertools 15 seem to be failing in installing:
>>> > > >
>>> > > > ==================================
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > >
>>> > > > *./configure -cuda gnuChecking for updates...Checking for available
>>> > > patches
>>> > > > online. This may take a few seconds...Available AmberTools 15
>>> > patches:No
>>> > > > patches availableAvailable Amber 14 patches:No patches
>>> > availableSearching
>>> > > > for python2... Found python2.6: /usr/bin/python2.6Error:
>>> Unsupported
>>> > CUDA
>>> > > > version 7.5 detected. AMBER requires CUDA version == 5.0
>>> .or. 5.5
>>> > > > .or. 6.0 .or. 6.5Configure failed due to the errors above!*
>>> > > > ==================================
>>> > > >
>>> > > > Your assistance will be much appreciated. :)
>>> > > >
>>> > > > --
>>> > > > Cheers,
>>> > > > Enrique
>>> > > > <http://www.rbc.org/odb/odb.shtml>
>>> > > > _______________________________________________
>>> > > > AMBER mailing list
>>> > > > AMBER.ambermd.org
>>> > > > http://lists.ambermd.org/mailman/listinfo/amber
>>> > >
>>> > >
>>> > > _______________________________________________
>>> > > AMBER mailing list
>>> > > AMBER.ambermd.org
>>> > > http://lists.ambermd.org/mailman/listinfo/amber
>>> > >
>>> >
>>> >
>>> >
>>> > --
>>> > Cheers,
>>> > Enrique
>>> > <http://www.rbc.org/odb/odb.shtml>
>>> > _______________________________________________
>>> > AMBER mailing list
>>> > AMBER.ambermd.org
>>> > http://lists.ambermd.org/mailman/listinfo/amber
>>> >
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>>
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Received on Fri Mar 18 2016 - 06:00:09 PDT
