Hi dears,
I dont know whats happening in my amber tests.
someone can help me ?
Wesley
make[1]: Entering directory '/home/labime/amber14/AmberTools/test'
./test_at_serial.sh
Warning: DO_PARALLEL is set to "mpirun -np 2".
This environment variable is being unset for serial testing.
Traceback (most recent call last):
File "<stdin>", line 18, in <module>
File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/__init__.py",
line 14, in <module>
from chemistry import amber, charmm, tinker
File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/amber/__init__.py",
line 13, in <module>
from chemistry.amber.netcdffiles import use, NetCDFTraj, NetCDFRestart,
HAS_NETCDF
File
"/home/labime/amber14/lib/python2.7/site-packages/chemistry/amber/netcdffiles.py",
line 75, in <module>
from scipy.io.netcdf import netcdf_file as spNetCDFFile
File "/usr/lib64/python2.7/site-packages/scipy/io/__init__.py", line 97,
in <module>
from .matlab import loadmat, savemat, whosmat, byteordercodes
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/__init__.py",
line 13, in <module>
from .mio import loadmat, savemat, whosmat
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/mio.py", line
12, in <module>
from .miobase import get_matfile_version, docfiller
File "/usr/lib64/python2.7/site-packages/scipy/io/matlab/miobase.py",
line 22, in <module>
from scipy.misc import doccer
File "/usr/lib64/python2.7/site-packages/scipy/misc/__init__.py", line
51, in <module>
from scipy.special import comb, factorial, factorial2, factorialk
File "/usr/lib64/python2.7/site-packages/scipy/special/__init__.py", line
627, in <module>
from ._ufuncs import *
File "__init__.pxd", line 155, in init scipy.special._ufuncs
(scipy/special/_ufuncs.c:26236)
ValueError: numpy.dtype has the wrong size, try recompiling
Makefile:6: recipe for target 'test' failed
make[1]: *** [test] Error 1
make[1]: Leaving directory '/home/labime/amber14/AmberTools/test'
Makefile:43: recipe for target 'test.serial' failed
make: *** [test.serial] Error 2
--
Wesley Júnio Alves da Conceição
Undergraduate Biophysics Student
Laboratory for Molecular Modelling and Dynamics - Carlos Chagas Filho
Biophysics Institute
Laboratory for Structural Molecular Biology - Pharmacy Faculty
Federal University of Rio de Janeiro
Rio de Janeiro - RJ
Brazil
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Received on Wed Mar 16 2016 - 11:00:03 PDT
