Dear Amber users,
While doing make test.parallel after installing AmberTools 15, I
experienced the following error. I have set export DO_PARALLEL='mpirun -np
2' , before doing the test. Any help would be highly appreciated
*****************************************************************************************************************************************
make[2]: Target `test.parallel.at' not remade because of errors.
make[2]: Leaving directory `/usr/local/amber14/test'
make[2]: Entering directory `/usr/local/amber14/AmberTools/test'
Finished test suite for AmberTools at Wed Mar 16 16:15:19 GMT 2016.
make[2]: Leaving directory `/usr/local/amber14/AmberTools/test'
370 file comparisons passed
2 file comparisons failed
60 tests experienced errors
Test log file saved as
/usr/local/amber14/logs/test_at_parallel/2016-03-16_15-58-10.log
Test diffs file saved as
/usr/local/amber14/logs/test_at_parallel/2016-03-16_15-58-10.diff
make[1]: Leaving directory `/usr/local/amber14/AmberTools/test'
==============================================================
/usr/local/amber14/src/Makefile not found.
This is expected if you have not installed Amber14.
==============================================================
***************************************************************************************************************************************
Part of the
/usr/local/amber14/logs/test_at_parallel/2016-03-16_15-58-10.log is shown
below,
**************************************************************************************************************************************
export TESTsander=/usr/local/amber14/bin/sander.MPI; cd jar_multi &&
./Run.jarz
Running multisander version of sander Amber14
Total processors = 2
Number of groups = 2
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
#0 0x7F482577D467
#1 0x7F482577DAAE
#2 0x7F4824C8466F
#3 0x7F482583ABE8
#4 0x5C1C51 in amopen_ at amopen.F90:90 (discriminator 1)
#5 0x508FD7 in mdread1_ at mdread1.F90:182
#6 0x4D6159 in sander_ at sander.F90:326
#7 0x4D4E12 in multisander at multisander.F90:436
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
(signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
./Run.jarz: Program error
make[2]: [test.sander.BASIC.MPI] Error 1 (ignored)
export TESTsander=/usr/local/amber14/bin/sander.MPI; cd ti_eth2meth_gas &&
./Run.test1
Running multisander version of sander Amber14
Total processors = 2
Number of groups = 2
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
#0 0x7FBD4B1CB467
#1 0x7FBD4B1CBAAE
#2 0x7FBD4A6D266F
#3 0x7FBD4B288BE8
#4 0x5C1C51 in amopen_ at amopen.F90:90 (discriminator 1)
#5 0x508FD7 in mdread1_ at mdread1.F90:182
#6 0x4D6159 in sander_ at sander.F90:326
#7 0x4D4E12 in multisander at multisander.F90:436
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
**************************************************************************************************************************************************
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Received on Wed Mar 16 2016 - 09:30:03 PDT
