We have done for example this extensive test of RNP sims
and sampling/forcefield analysis
Krepl, M.; Havrila, M.; Stadlbauer, P.; Banas, P.; Otyepka, M.; Pasulka,
J.; Stefl, R.; Sponer, J., Can We Execute Stable Microsecond-Scale
Atomistic Simulations of Protein-RNA Complexes? Journal of Chemical Theory
and Computation 2015, 11, 1220-1243
-------------------------------------------------------
Jiri Sponer
Institute of Biophysics
Academy of Sciences of the Czech Republic
Kralovopolska 135
CZ-61265 Brno
Czech Republic
e-mail: sponer.ncbr.muni.cz
fax: 420 5412 12179
phone: 420 5415 17133
http://www.ibp.cz/
http://www.ibp.cz/en/departments/structure-and-dynamics-of-nucleic-acids/
-----------------------------------------------------------
On Sat, 5 Mar 2016, Sreemol G wrote:
> Date: Sat, 5 Mar 2016 09:19:46 +0530
> From: Sreemol G <sreemolinfo.gmail.com>
> Reply-To: AMBER Mailing List <amber.ambermd.org>
> To: AMBER Mailing List <amber.ambermd.org>
> Subject: [AMBER] for protein- RNA complex simulation
>
> Hello amber users,
>
> I want to do protein-RNA complex simulation. Can we simulate
> protein-RNA complex in AMBER. If so, what is the force field that we should
> use. How far it is different from doing Protein simulation and Nucleic acid
> simulation??
> Thanks
>
> --
> With kind regards,
> G. Sreemol
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sat Mar 05 2016 - 01:00:03 PST
