On Sat, Mar 5, 2016 at 2:04 AM, Sreemol G <sreemolinfo.gmail.com> wrote:
> Hello all,
>
> Can anyone please tell me how adenine, thymine, cytosine, Guanine and
> uracil are defined in leap??
>
The normal way?
Do you have a more specific question? You can use the "edit" command in
xleap to investigate individual residues after you load a force field. For
example, inside xleap:
source leaprc.ff14SB
edit A
That will show you adenine
edit DA
That will show you deoxyadenine.
(These residues are actually defined in the residue template libraries that
are loaded as part of a force field, not actually by leap itself). But I
can't expect to give information useful to you unless you provide a more
concrete description of what it is you are trying (but unable) to do.
HTH,
Jason
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Received on Fri Mar 04 2016 - 23:30:06 PST
